If you’re on the hunt for a bright, healthy, and delightfully zesty treat, you’ve got to try this Lemon Chia Breakfast Cookies Recipe. These cookies are the perfect marriage of fresh lemon zing and the wholesome crunch of chia seeds, making each bite a sunny, satisfying way to start your day. The combination of almond and coconut flours lends a tender, slightly chewy texture that feels indulgent without the guilt. Whether you’re pressed for time in the morning or want a quick snack that fuels you, these cookies fit the bill beautifully and are guaranteed to brighten up your breakfast routine.

Ingredients You’ll Need
Gathering the right ingredients is half the fun because these essentials come together to create a balance of flavor, texture, and nutrition. Each element plays a distinct role, from the nutty warmth of almond flour to the fresh citrus punch from lemon zest and juice.
- 1 cup almond flour: Creates a moist, tender base packed with protein and healthy fats.
- 2 tablespoons coconut flour: Adds a subtle sweetness and helps absorb moisture for perfect texture.
- 2 tablespoons chia seeds: Brings crunch and a superfood boost while helping to bind the batter.
- ½ teaspoon baking soda: Gives the cookies just enough lift and lightness.
- Pinch of salt: Enhances all the flavors and balances the sweetness.
- 1 egg (or flax egg for vegan option): Acts as a binder to hold the cookie dough together beautifully.
- 2 tablespoons coconut oil, melted: Adds richness and moisture with a mild tropical note.
- 2 tablespoons maple syrup or agave: Natural sweetness that pairs wonderfully with lemon; monk fruit syrup works for sugar-free versions.
- 1 tablespoon lemon juice: Infuses the cookies with fresh, bright citrus flavor.
- 1 teaspoon lemon zest: Intensifies the lemony aroma and taste with a vibrant burst.
- 1 teaspoon vanilla extract: Round out the flavors with a subtle warming note.
How to Make Lemon Chia Breakfast Cookies Recipe
Step 1: Preheat and Prepare
Start by heating your oven to 350°F (175°C) and lining a baking sheet with parchment paper. This simple prep work makes clean-up easy and ensures your cookies don’t stick, which is vital for keeping those perfect shapes intact.
Step 2: Mix the Dry Ingredients
In a large mixing bowl, whisk together the almond flour, coconut flour, chia seeds, baking soda, and a pinch of salt. This combination is the foundation of your cookie’s delightful texture and provides a wholesome, fiber-rich base for the other ingredients to shine.
Step 3: Combine the Wet Ingredients
In another bowl, whisk your egg (or flax egg) together with the melted coconut oil, maple syrup (or your choice of sweetener), lemon juice, lemon zest, and vanilla extract. These ingredients introduce moisture, sweetness, and that unmistakable lemon tang that makes these cookies so irresistible.
Step 4: Bring It All Together
Pour the wet ingredients into the bowl of dry ingredients and stir until fully combined. You’re aiming for a thick, slightly sticky batter. Let it rest for about 5 minutes so the chia seeds can soak up moisture – this step helps the cookies hold their shape and adds a pleasant chew.
Step 5: Shape Your Cookies
Using a spoon or cookie scoop, form rounds roughly 1.5 inches in diameter, and place them evenly spaced on your prepared baking sheet. Flatten each gently with the back of your spoon so they bake evenly and develop that signature cookie texture.
Step 6: Bake Until Golden
Bake the cookies for 10 to 12 minutes, or until their edges start to turn a light golden color. The scent of lemon will fill your kitchen and signal that your breakfast treat is almost ready to enjoy.
Step 7: Cool and Enjoy
Allow the cookies to cool on the baking sheet for about 5 minutes before transferring them to a wire rack. This resting time lets them firm up perfectly. These Lemon Chia Breakfast Cookies taste amazing fresh, but if you can wait, the flavors deepen beautifully by the next day.
How to Serve Lemon Chia Breakfast Cookies Recipe

Garnishes
Sprinkle a little extra lemon zest over the cookies just before serving for that fresh zing that brightens every bite. A light dusting of powdered sugar or a tiny drizzle of honey can also add a lovely finishing touch.
Side Dishes
Pair these cookies with a dollop of Greek yogurt topped with fresh berries or a cup of your favorite herbal tea. The creamy or soothing beverage contrasts wonderfully with the lively lemon flavor and crunchy chia seeds.
Creative Ways to Present
Arrange a stack of these cookies alongside a small bowl of lemon curd or almond butter for dipping. Serving them with a colorful fruit salad or alongside your morning smoothie bowl can transform them into a stunning brunch centerpiece that’s both pretty and nourishing.
Make Ahead and Storage
Storing Leftovers
Keep your Lemon Chia Breakfast Cookies in an airtight container at room temperature for up to 3 days. This helps maintain their crispy edges and soft centers without drying out.
Freezing
These cookies freeze beautifully! Place them in a single layer on a baking sheet to freeze initially, then transfer to a freezer-safe container or ziptop bag. They’ll stay fresh for up to 2 months, making them a convenient grab-and-go breakfast option.
Reheating
To bring back their just-baked charm, warm frozen or refrigerated cookies in a toaster oven or regular oven at 300°F for about 5 minutes. This revives their texture and releases the lovely lemon aroma, making you feel like you just baked them fresh.
FAQs
Can I use other flours instead of almond and coconut flour?
Almond and coconut flours provide unique moisture and texture, but you can experiment with oat or whole wheat flour. Just note the texture and baking time may vary, and the cookies might not be as tender.
How do chia seeds affect the cookie texture?
Chia seeds absorb moisture and create a gel-like coating, adding chewiness and a slight crunch that enhances mouthfeel. They also boost the nutritional profile with fiber and omega-3s.
Can I make these cookies sugar-free?
Absolutely! Swap the maple syrup or agave for monk fruit syrup or another keto-friendly sweetener. Just ensure it’s a liquid form to keep the cookie batter properly moist.
Is there a vegan alternative to the egg?
Yes, the recipe includes using a flax egg (1 tablespoon flaxseed mixed with 3 tablespoons water), which works great as a plant-based binder to replace the egg without sacrificing texture.
Can these cookies be made nut-free?
Since almond flour is a main ingredient, these cookies rely on it for structure and flavor. If you need nut-free options, try substituting with sunflower seed flour, but results will differ slightly in flavor and texture.
Final Thoughts
If you love waking up to a breakfast that’s both nourishing and bursting with flavor, this Lemon Chia Breakfast Cookies Recipe is going to be your new best friend. Easy to whip up, packed with wholesome ingredients, and bursting with bright citrus notes, these cookies are the perfect way to brighten your mornings or satisfy snack cravings. Give them a try and watch how quickly they become a staple in your kitchen.
Print
Lemon Chia Breakfast Cookies Recipe
- Prep Time: 10 minutes
- Cook Time: 12 minutes
- Total Time: 22 minutes
- Yield: 12 cookies
- Category: Breakfast
- Method: Baking
- Cuisine: American
- Diet: Gluten Free
Description
Bright and healthy Lemon Chia Breakfast Cookies that are gluten-free, vegan-friendly (with a flax egg substitution), and sweetened naturally with maple syrup or agave. These cookies combine nutrient-dense almond and coconut flours with chia seeds, lemon zest, and juice for a refreshing morning treat that’s easy to prepare and perfect for on-the-go breakfasts or snacks.
Ingredients
Dry Ingredients
- 1 cup almond flour
- 2 tablespoons coconut flour
- 2 tablespoons chia seeds
- ½ teaspoon baking soda
- Pinch of salt
Wet Ingredients
- 1 egg (or flax egg for vegan option: 1 tbsp flaxseed + 3 tbsp water)
- 2 tablespoons coconut oil, melted
- 2 tablespoons maple syrup or agave (for sugar-free: monk fruit syrup)
- 1 tablespoon lemon juice
- 1 teaspoon lemon zest
- 1 teaspoon vanilla extract
Instructions
- Preheat Oven and Prepare Baking Sheet: Preheat your oven to 350°F (175°C). Line a baking sheet with parchment paper to prevent sticking and ensure even baking.
- Mix Dry Ingredients: In a mixing bowl, whisk together almond flour, coconut flour, chia seeds, baking soda, and salt to evenly distribute the leavening agent and chia seeds.
- Combine Wet Ingredients: In a separate bowl, beat the egg (or prepared flax egg), melted coconut oil, maple syrup, lemon juice, lemon zest, and vanilla extract until smooth and well combined.
- Form the Batter: Pour the wet ingredients into the dry mixture and stir thoroughly until a slightly thick and sticky batter forms. Allow the mixture to rest for 5 minutes so the chia seeds can absorb moisture and help bind the dough.
- Shape Cookies: Use a spoon or cookie scoop to form 1.5-inch rounds and place them evenly spaced on the prepared baking sheet. Gently flatten each cookie with the back of the spoon for even baking.
- Bake: Bake in the preheated oven for 10–12 minutes or until the edges begin to turn golden brown, indicating they are cooked through.
- Cool and Serve: Remove from oven and let the cookies cool on the baking tray for about 5 minutes before transferring them to a wire rack to cool completely. Enjoy them fresh or store for later; flavors improve after a day.
Notes
- For a vegan option, replace the egg with a flax egg made by mixing 1 tablespoon of flaxseed with 3 tablespoons of water and letting it sit for 5 minutes.
- For a sugar-free version, swap maple syrup or agave with monk fruit syrup.
- Allowing the batter to rest lets the chia seeds gel, which improves the texture and binding of the cookies.
- Store cookies in an airtight container at room temperature for up to 5 days or freeze for longer storage.
- These cookies have a slightly dense texture due to almond and coconut flour but are perfect for a nutritious breakfast or snack.

