If you’ve been searching for a delicious yet wholesome treat, you’re going to fall in love with this Healthy Pumpkin Chocolate Chip Cookies Recipe. These cookies perfectly blend the warm spiciness of fall spices with sweet, melty dark chocolate, all while sneaking in pumpkin puree for moisture and nutrients. They’re soft, chewy, and incredibly satisfying without relying on refined sugars or unhealthy fats. Whether you’re baking for a cozy afternoon snack or a festive gathering, these cookies bring that cozy homemade vibe you crave, but with a health-conscious twist.

Ingredients You’ll Need
Each ingredient in this recipe plays a key role in balancing flavor, texture, and nutritional value, making these cookies not only tasty but satisfyingly wholesome. Here’s what you’ll need to whip up these delightful treats:
- 1 cup canned pumpkin puree: Adds natural moisture and subtle sweetness, plus a boost of vitamins and fiber.
- 1/2 cup coconut oil, melted: Provides a dairy-free fat that keeps cookies tender and adds a hint of tropical flavor.
- 1/2 cup maple syrup: A natural sweetener that enhances the pumpkin’s earthiness without overpowering it.
- 1 large egg: Binds ingredients together for that perfect chewy texture.
- 1 teaspoon vanilla extract: Deepens the overall flavor with a comforting aroma.
- 1 1/2 cups whole wheat flour: Gives the cookies a hearty texture and wholesome goodness.
- 1 teaspoon baking soda: Helps the cookies rise just right, keeping them soft and light.
- 1 teaspoon ground cinnamon: The star spice brings warmth and a classic pumpkin pie vibe.
- 1/2 teaspoon ground nutmeg: Adds a subtle nutty, sweet heat that complements cinnamon beautifully.
- 1/2 teaspoon ground ginger: Introduces a slight zing that rounds out the spice profile.
- 1/2 teaspoon salt: Balances sweetness and enhances all the other flavors.
- 1 cup dark chocolate chips: Melts in every bite, adding indulgence without overwhelming sugar.
How to Make Healthy Pumpkin Chocolate Chip Cookies Recipe
Step 1: Preheat and Prepare
Start by preheating your oven to 350°F (175°C). Line a baking sheet with parchment paper or a silicone baking mat to prevent sticking and make cleanup a breeze.
Step 2: Mix the Wet Ingredients
In a large bowl, whisk together the pumpkin puree, melted coconut oil, maple syrup, egg, and vanilla extract until the mixture is smooth and well combined. This creamy base is what keeps the cookies tender and flavorful.
Step 3: Combine Dry Ingredients
In a separate bowl, mix the whole wheat flour, baking soda, cinnamon, nutmeg, ginger, and salt. These spices infuse the cookies with cozy seasonal notes that pair beautifully with pumpkin.
Step 4: Bring Wet and Dry Ingredients Together
Gradually add the dry ingredients to the wet mixture, stirring gently until just combined. Overmixing can make cookies tough, so take care here. Now fold in the dark chocolate chips to scatter those melty gems throughout.
Step 5: Scoop the Dough
Drop spoonfuls of cookie dough onto the prepared baking sheet, leaving about 2 inches between each so they have room to spread and bake evenly.
Step 6: Bake to Perfection
Bake the cookies for 10-12 minutes or until they’re set and have lightly browned edges. The smell during this time will have your kitchen smelling like fall in full swing.
Step 7: Cool and Enjoy
Allow the cookies to cool on the baking sheet for a few minutes to firm up, then transfer them to a wire rack to cool completely. This helps them set and keeps them chewy in all the right spots.
How to Serve Healthy Pumpkin Chocolate Chip Cookies Recipe

Garnishes
For a quick presentation upgrade, sprinkle a pinch of cinnamon or a few extra chocolate chips on top of warm cookies right after baking. If you want to get fancy, a light drizzle of melted dark chocolate adds an elegant touch and extra richness.
Side Dishes
These cookies pair wonderfully with a warm cup of chai tea or your favorite coffee blend. For an extra indulgence, a scoop of vanilla Greek yogurt or a dollop of nut butter on the side can complement the flavors while keeping the snack balanced.
Creative Ways to Present
Serve these cookies stacked with layers of sliced banana or apple between to create unique mini dessert sandwiches. You can even freeze them with a bit of softened cream cheese filling for a cold, creamy twist on this Healthy Pumpkin Chocolate Chip Cookies Recipe.
Make Ahead and Storage
Storing Leftovers
Keep leftover cookies in an airtight container at room temperature for up to 3 days. This maintains their softness and makes it easy to grab one whenever a snack craving hits.
Freezing
To store cookies longer, freeze them in a single layer on a baking sheet, then transfer to a freezer-safe bag or container. They hold up well in the freezer for up to 2 months, perfect for planning ahead for busy days.
Reheating
Warm frozen or refrigerated cookies in the microwave for 10-15 seconds or pop them in a 300°F (150°C) oven for 5 minutes to bring back that fresh-baked texture and melty chocolate goodness.
FAQs
Can I use fresh pumpkin instead of canned puree?
Yes, you can make your own pumpkin puree by roasting and pureeing fresh pumpkin. Just ensure it’s smooth and measured accurately to 1 cup for the recipe to turn out perfectly.
Are these cookies gluten-free?
This version uses whole wheat flour, which contains gluten. To make them gluten-free, try substituting a gluten-free all-purpose flour blend, but results may vary slightly in texture.
Can I substitute the coconut oil with another fat?
Absolutely! Melted butter or a neutral oil like avocado oil can be used instead, though coconut oil adds a subtle flavor that pairs nicely with pumpkin and spices.
What if I don’t have all the spices listed?
While the cinnamon, nutmeg, and ginger create a wonderful spice blend, you can use just cinnamon alone or add a pinch of pumpkin pie spice if you have it. The cookies will still be delicious.
How do I make these cookies less sweet?
Reduce the maple syrup slightly or choose dark chocolate chips with a higher cocoa content (70% or more) to cut down on sweetness while maintaining rich flavor.
Final Thoughts
This Healthy Pumpkin Chocolate Chip Cookies Recipe is a delightful way to enjoy a classic favorite with fewer guilt-inducing ingredients. Every bite delivers the perfect balance of wholesome goodness, cozy spices, and chocolatey joy. I can’t wait for you to try baking these at home and experience that warm, comforting feeling only homemade cookies can bring. Happy baking!
Print
Healthy Pumpkin Chocolate Chip Cookies Recipe
- Prep Time: 15 minutes
- Cook Time: 12 minutes
- Total Time: 27 minutes
- Yield: 24 cookies
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
These Healthy Pumpkin Chocolate Chip Cookies are a delightful fall treat, combining the natural sweetness and moisture of pumpkin puree with the rich flavor of dark chocolate chips. Made with whole wheat flour and sweetened with maple syrup, these cookies offer a wholesome twist on a classic favorite, perfect for a snack or dessert that feels indulgent yet nutritious.
Ingredients
Wet Ingredients
- 1 cup canned pumpkin puree
- 1/2 cup coconut oil, melted
- 1/2 cup maple syrup
- 1 large egg
- 1 teaspoon vanilla extract
Dry Ingredients
- 1 1/2 cups whole wheat flour
- 1 teaspoon baking soda
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/2 teaspoon ground ginger
- 1/2 teaspoon salt
Add-ins
- 1 cup dark chocolate chips
Instructions
- Preheat Oven: Preheat your oven to 350°F (175°C). Line a baking sheet with parchment paper or a silicone baking mat to prevent sticking and ensure even baking.
- Mix Wet Ingredients: In a large mixing bowl, whisk together the pumpkin puree, melted coconut oil, maple syrup, egg, and vanilla extract until the mixture is smooth and well combined.
- Combine Dry Ingredients: In a separate bowl, whisk together the whole wheat flour, baking soda, ground cinnamon, ground nutmeg, ground ginger, and salt until evenly mixed.
- Combine Wet and Dry: Gradually add the dry ingredient mixture to the wet ingredients, stirring gently until just combined to avoid overmixing, which can result in tough cookies. Then fold in the dark chocolate chips evenly throughout the dough.
- Portion Dough: Drop spoonfuls of dough onto the prepared baking sheet, spacing each about 2 inches apart to allow the cookies to spread while baking.
- Bake Cookies: Place the baking sheet in the preheated oven and bake for 10-12 minutes. The cookies are done when they are set and lightly browned around the edges.
- Cool Cookies: Let the cookies cool on the baking sheet for a few minutes to firm up before transferring them to a wire rack to cool completely, which helps maintain their texture.
Notes
- For a vegan version, substitute the egg with a flax egg or chia egg and ensure maple syrup is used instead of honey if preferred.
- Using whole wheat flour adds fiber and nutrients, but you can substitute with all-purpose flour for a lighter texture.
- Store cookies in an airtight container at room temperature for up to 5 days or freeze for longer storage.
- Be careful not to overbake to keep the cookies soft and chewy.
- You can add chopped nuts or raisins for extra texture and flavor if desired.

